J3_6V3E_014

3D structure

PDB id

6V3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6V3E_014 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.1524

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6V3E|1|sN1|C|933
6V3E|1|sN1|A|934
6V3E|1|sN1|A|935
6V3E|1|sN1|G|936
*
6V3E|1|sN1|C|1341
6V3E|1|sN1|U|1342
6V3E|1|sN1|A|1343
6V3E|1|sN1|G|1344
6V3E|1|sN1|U|1345
6V3E|1|sN1|A|1346
6V3E|1|sN1|A|1347
*
6V3E|1|sN1|U|1369
6V3E|1|sN1|G|1370
6V3E|1|sN1|A|1371
6V3E|1|sN1|A|1372
6V3E|1|sN1|U|1373
6V3E|1|sN1|A|1374
6V3E|1|sN1|C|1375
6V3E|1|sN1|G|1376

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain i

30S ribosomal protein S9