J3_6VLZ_002

3D structure

PDB id

6VLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CAG*CACAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VLZ_002 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.2105

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

6VLZ|1|A|C|1930
6VLZ|1|A|A|1931
6VLZ|1|A|G|1932
*
6VLZ|1|A|C|1942
6VLZ|1|A|A|1943
6VLZ|1|A|C|1944
6VLZ|1|A|A|1945
6VLZ|1|A|C|1946
*
6VLZ|1|A|G|1970
6VLZ|1|A|A|1971
6VLZ|1|A|A|1972
6VLZ|1|A|G|1973

Current chains

Chain A

16s rRNA

Nearby chains

Chain 5

39S ribosomal protein L37, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial