3D structure

PDB id
6VU3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
6VU3|1|D|A|975, 6VU3|1|D|G|976, 6VU3|1|D|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VU3_007 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.0707
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6VU3|1|D|U|955
6VU3|1|D|U|956
6VU3|1|D|U|957
6VU3|1|D|A|958
6VU3|1|D|A|959
6VU3|1|D|U|960
6VU3|1|D|U|961
6VU3|1|D|C|962
*
6VU3|1|D|G|973
6VU3|1|D|A|974
6VU3|1|D|A|975
6VU3|1|D|G|976
6VU3|1|D|A|977
6VU3|1|D|A|978
6VU3|1|D|C|979
6VU3|1|D|C|980
6VU3|1|D|U|981
6VU3|1|D|U|982
6VU3|1|D|A|983
6VU3|1|D|C|984
*
6VU3|1|D|G|1221
6VU3|1|D|G|1222
6VU3|1|D|C|1223
6VU3|1|D|U|1224
6VU3|1|D|A|1225

Current chains

Chain D
16S rRNA

Nearby chains

Chain P
30S ribosomal protein S10
Chain S
30S ribosomal protein S14
Chain W
30S ribosomal protein S19
Chain X
30S ribosomal protein S13

Coloring options:


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