J3_6VU3_008

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

6VU3|1|D|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VU3_008 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1166

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

6VU3|1|D|C|990
6VU3|1|D|U|991
6VU3|1|D|U|992
6VU3|1|D|G|993
*
6VU3|1|D|C|1045
6VU3|1|D|A|1046
6VU3|1|D|G|1047
*
6VU3|1|D|C|1210
6VU3|1|D|U|1211
6VU3|1|D|U|1212
6VU3|1|D|A|1213
6VU3|1|D|C|1214
6VU3|1|D|G|1215

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14