J3_6VU3_013

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VU3_013 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.0489

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6VU3|1|a|G|30
6VU3|1|a|C|31
*
6VU3|1|a|G|474
6VU3|1|a|C|475
6VU3|1|a|G|476
6VU3|1|a|A|477
6VU3|1|a|A|478
6VU3|1|a|A|479
6VU3|1|a|A|480
6VU3|1|a|G|481
*
6VU3|1|a|C|509
6VU3|1|a|C|510

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain 3

50S ribosomal protein L24

Chain z

50S ribosomal protein L20