J3_6VWL_006
3D structure
- PDB id
- 6VWL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VWL_006 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.1485
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.1
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6VWL|1|1|U|943
6VWL|1|1|G|944
6VWL|1|1|G|945
6VWL|1|1|A|946
*
6VWL|1|1|U|1235
6VWL|1|1|A|1236
6VWL|1|1|C|1237
*
6VWL|1|1|G|1337
6VWL|1|1|G|1338
6VWL|1|1|A|1339
6VWL|1|1|A|1340
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain f
- 30S ribosomal protein S7
- Chain h
- 30S ribosomal protein S9
- Chain l
- 30S ribosomal protein S13
Coloring options: