J3_6VWL_016

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6VWL|1|2|U|686, 6VWL|1|2|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VWL_016 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3342

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6VWL|1|2|U|683
6VWL|1|2|G|684
6VWL|1|2|A|685
6VWL|1|2|U|686
6VWL|1|2|C|687
6VWL|1|2|U|688
6VWL|1|2|A|689
*
6VWL|1|2|U|773
6VWL|1|2|G|774
6VWL|1|2|G|775
*
6VWL|1|2|C|791
6VWL|1|2|A|792
6VWL|1|2|A|793
6VWL|1|2|A|794

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain AA

50S ribosomal protein L34