J3_6VWL_019

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6VWL|1|2|C|1607, 6VWL|1|2|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VWL_019 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.3627

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

6VWL|1|2|C|1306
6VWL|1|2|A|1307
6VWL|1|2|A|1308
6VWL|1|2|G|1309
*
6VWL|1|2|C|1605
6VWL|1|2|C|1606
6VWL|1|2|C|1607
6VWL|1|2|A|1608
6VWL|1|2|A|1609
6VWL|1|2|A|1610
6VWL|1|2|C|1611
*
6VWL|1|2|G|1620
6VWL|1|2|U|1621
6VWL|1|2|G|1622

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain AA

50S ribosomal protein L34