J3_6VWL_021

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VWL_021 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.076

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6VWL|1|2|C|2091
6VWL|1|2|U|2092
6VWL|1|2|G|2093
*
6VWL|1|2|C|2196
6VWL|1|2|U|2197
6VWL|1|2|A|2198
6VWL|1|2|A|2199
6VWL|1|2|C|2200
*
6VWL|1|2|G|2223
6VWL|1|2|G|2224
6VWL|1|2|A|2225
6VWL|1|2|C|2226
6VWL|1|2|A|2227
6VWL|1|2|G|2228

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain F

50S ribosomal protein L9

Chain V

50S ribosomal protein L28