J3_6VWL_029

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6VWL|1|2|A|504, 6VWL|1|2|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VWL_029 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.0645

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6VWL|1|2|G|30
6VWL|1|2|C|31
*
6VWL|1|2|G|474
6VWL|1|2|C|475
6VWL|1|2|G|476
6VWL|1|2|A|477
6VWL|1|2|A|478
6VWL|1|2|A|479
6VWL|1|2|A|480
6VWL|1|2|G|481
6VWL|1|2|A|482
6VWL|1|2|A|483
6VWL|1|2|C|484
*
6VWL|1|2|G|496
6VWL|1|2|A|497
6VWL|1|2|G|498
6VWL|1|2|U|499
6VWL|1|2|G|500
6VWL|1|2|A|501
6VWL|1|2|A|502
6VWL|1|2|A|503
6VWL|1|2|A|504
6VWL|1|2|A|505
6VWL|1|2|G|506
6VWL|1|2|A|507
6VWL|1|2|A|508
6VWL|1|2|C|509
6VWL|1|2|C|510

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L20

Chain Q

50S ribosomal protein L22

Chain S

50S ribosomal protein L24