J3_6VWM_006
3D structure
- PDB id
- 6VWM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 6VWM|1|1|A|975, 6VWM|1|1|G|976
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VWM_006 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.2103
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6VWM|1|1|U|955
6VWM|1|1|U|956
6VWM|1|1|U|957
6VWM|1|1|A|958
6VWM|1|1|A|959
6VWM|1|1|U|960
6VWM|1|1|U|961
6VWM|1|1|C|962
*
6VWM|1|1|G|973
6VWM|1|1|A|974
6VWM|1|1|A|975
6VWM|1|1|G|976
6VWM|1|1|A|977
6VWM|1|1|A|978
6VWM|1|1|C|979
6VWM|1|1|C|980
6VWM|1|1|U|981
6VWM|1|1|U|982
6VWM|1|1|A|983
6VWM|1|1|C|984
*
6VWM|1|1|G|1221
6VWM|1|1|G|1222
6VWM|1|1|C|1223
6VWM|1|1|U|1224
6VWM|1|1|A|1225
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain 4
- HIV ribosomal frameshift signal
- Chain i
- 30S ribosomal protein S10
- Chain l
- 30S ribosomal protein S13
- Chain m
- 30S ribosomal protein S14
- Chain r
- 30S ribosomal protein S19
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