J3_6VWM_009
3D structure
- PDB id
- 6VWM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VWM_009 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.2
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6VWM|1|1|C|1063
6VWM|1|1|G|1064
6VWM|1|1|U|1065
6VWM|1|1|C|1066
6VWM|1|1|A|1067
6VWM|1|1|G|1068
*
6VWM|1|1|C|1107
6VWM|1|1|G|1108
6VWM|1|1|C|1109
6VWM|1|1|A|1110
6VWM|1|1|A|1111
6VWM|1|1|C|1112
6VWM|1|1|C|1113
*
6VWM|1|1|G|1187
6VWM|1|1|A|1188
6VWM|1|1|U|1189
6VWM|1|1|G|1190
6VWM|1|1|A|1191
6VWM|1|1|C|1192
6VWM|1|1|G|1193
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S3
- Chain d
- 30S ribosomal protein S5
- Chain h
- 30S ribosomal protein S9
- Chain i
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S14
Coloring options: