J3_6VWM_017

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VWM_017 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.1594

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6VWM|1|2|C|1298
6VWM|1|2|G|1299
6VWM|1|2|G|1300
6VWM|1|2|A|1301
6VWM|1|2|A|1302
6VWM|1|2|G|1303
*
6VWM|1|2|C|1625
6VWM|1|2|A|1626
6VWM|1|2|G|1627
*
6VWM|1|2|C|1639
6VWM|1|2|A|1640
6VWM|1|2|A|1641
6VWM|1|2|G|1642

Current chains

Chain 2

23S ribosomal RNA

Nearby chains