J3_6VWM_018

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6VWM|1|2|C|1607, 6VWM|1|2|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VWM_018 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.3542

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

6VWM|1|2|C|1306
6VWM|1|2|A|1307
6VWM|1|2|A|1308
6VWM|1|2|G|1309
*
6VWM|1|2|C|1605
6VWM|1|2|C|1606
6VWM|1|2|C|1607
6VWM|1|2|A|1608
6VWM|1|2|A|1609
6VWM|1|2|A|1610
6VWM|1|2|C|1611
*
6VWM|1|2|G|1620
6VWM|1|2|U|1621
6VWM|1|2|G|1622

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain AA

50S ribosomal protein L34