J3_6VWM_032

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6VWM|1|2|A|504, 6VWM|1|2|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VWM_032 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.0784

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6VWM|1|2|G|30
6VWM|1|2|C|31
*
6VWM|1|2|G|474
6VWM|1|2|C|475
6VWM|1|2|G|476
6VWM|1|2|A|477
6VWM|1|2|A|478
6VWM|1|2|A|479
6VWM|1|2|A|480
6VWM|1|2|G|481
6VWM|1|2|A|482
6VWM|1|2|A|483
6VWM|1|2|C|484
*
6VWM|1|2|G|496
6VWM|1|2|A|497
6VWM|1|2|G|498
6VWM|1|2|U|499
6VWM|1|2|G|500
6VWM|1|2|A|501
6VWM|1|2|A|502
6VWM|1|2|A|503
6VWM|1|2|A|504
6VWM|1|2|A|505
6VWM|1|2|G|506
6VWM|1|2|A|507
6VWM|1|2|A|508
6VWM|1|2|C|509
6VWM|1|2|C|510

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L20

Chain Q

50S ribosomal protein L22

Chain S

50S ribosomal protein L24