J3_6VWM_033
3D structure
- PDB id
- 6VWM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6VWM|1|2|U|34, 6VWM|1|2|U|448, 6VWM|1|2|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VWM_033 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.103
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6VWM|1|2|C|32
6VWM|1|2|C|33
6VWM|1|2|U|34
6VWM|1|2|G|35
*
6VWM|1|2|C|445
6VWM|1|2|G|446
6VWM|1|2|A|447
6VWM|1|2|U|448
6VWM|1|2|A|449
6VWM|1|2|G|450
6VWM|1|2|U|451
6VWM|1|2|G|452
6VWM|1|2|A|453
6VWM|1|2|A|454
6VWM|1|2|C|455
6VWM|1|2|C|456
6VWM|1|2|A|457
6VWM|1|2|G|458
6VWM|1|2|U|459
6VWM|1|2|A|460
6VWM|1|2|C|461
*
6VWM|1|2|G|468
6VWM|1|2|G|469
6VWM|1|2|A|470
6VWM|1|2|A|471
6VWM|1|2|A|472
6VWM|1|2|G|473
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain AA
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L4
- Chain O
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L23
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