J3_6VWN_001
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GC*GGAAUAU*AGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VWN_001 not in the Motif Atlas
- Homologous match to J3_5J7L_001
- Geometric discrepancy: 0.1496
- The information below is about J3_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.4
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6VWN|1|1|G|46
6VWN|1|1|C|47
*
6VWN|1|1|G|361
6VWN|1|1|G|362
6VWN|1|1|A|363
6VWN|1|1|A|364
6VWN|1|1|U|365
6VWN|1|1|A|366
6VWN|1|1|U|367
*
6VWN|1|1|A|393
6VWN|1|1|G|394
6VWN|1|1|C|395
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain k
- 30S ribosomal protein S12
- Chain o
- 30S ribosomal protein S16
Coloring options: