J3_6VWN_008

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAG*UGUGCC*GGAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VWN|1|1|G|1003
6VWN|1|1|A|1004
6VWN|1|1|A|1005
6VWN|1|1|G|1006
*
6VWN|1|1|U|1023
6VWN|1|1|G|1024
6VWN|1|1|U|1025
6VWN|1|1|G|1026
6VWN|1|1|C|1027
6VWN|1|1|C|1028
*
6VWN|1|1|G|1033
6VWN|1|1|G|1034
6VWN|1|1|A|1035
6VWN|1|1|A|1036
6VWN|1|1|C|1037

Current chains

Chain 1

16S ribosomal RNA

Nearby chains