J3_6VWN_015

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6VWN|1|2|U|686, 6VWN|1|2|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VWN_015 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.103

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6VWN|1|2|U|683
6VWN|1|2|G|684
6VWN|1|2|A|685
6VWN|1|2|U|686
6VWN|1|2|C|687
6VWN|1|2|U|688
6VWN|1|2|A|689
*
6VWN|1|2|U|773
6VWN|1|2|G|774
6VWN|1|2|G|775
*
6VWN|1|2|C|791
6VWN|1|2|A|792
6VWN|1|2|A|793
6VWN|1|2|A|794

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain AA

50S ribosomal protein L34