J3_6VWN_019

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VWN_019 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1338

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

6VWN|1|2|U|1344
6VWN|1|2|C|1345
6VWN|1|2|G|1346
6VWN|1|2|A|1347
6VWN|1|2|C|1348
6VWN|1|2|C|1349
*
6VWN|1|2|G|1382
6VWN|1|2|A|1383
6VWN|1|2|A|1384
6VWN|1|2|A|1385
*
6VWN|1|2|U|1402
6VWN|1|2|A|1403

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L23