J3_6VWN_023

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*CC*GAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VWN_023 not in the Motif Atlas

Homologous match to J3_5J7L_047

Geometric discrepancy: 0.3231

The information below is about J3_5J7L_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30104.1

Basepair signature

cWW-F-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6VWN|1|2|C|2789
6VWN|1|2|U|2790
6VWN|1|2|G|2791
*
6VWN|1|2|C|2805
6VWN|1|2|C|2806
*
6VWN|1|2|G|2892
6VWN|1|2|A|2893
6VWN|1|2|G|2894

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3