J3_6VWN_028
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCACAAG*CUAGUAA*UGAAUACGUUCCC
- Length
- 27 nucleotides
- Bulged bases
- 6VWN|1|1|G|1347
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6VWN|1|1|G|933
6VWN|1|1|C|934
6VWN|1|1|A|935
6VWN|1|1|C|936
6VWN|1|1|A|937
6VWN|1|1|A|938
6VWN|1|1|G|939
*
6VWN|1|1|C|1344
6VWN|1|1|U|1345
6VWN|1|1|A|1346
6VWN|1|1|G|1347
6VWN|1|1|U|1348
6VWN|1|1|A|1349
6VWN|1|1|A|1350
*
6VWN|1|1|U|1372
6VWN|1|1|G|1373
6VWN|1|1|A|1374
6VWN|1|1|A|1375
6VWN|1|1|U|1376
6VWN|1|1|A|1377
6VWN|1|1|C|1378
6VWN|1|1|G|1379
6VWN|1|1|U|1380
6VWN|1|1|U|1381
6VWN|1|1|C|1382
6VWN|1|1|C|1383
6VWN|1|1|C|1384
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain f
- 30S ribosomal protein S7
- Chain h
- 30S ribosomal protein S9
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