J3_6VWN_029
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 6VWN|1|1|U|1212, 6VWN|1|1|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VWN_029 not in the Motif Atlas
- Homologous match to J3_5J7L_053
- Geometric discrepancy: 0.1999
- The information below is about J3_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.2
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6VWN|1|1|C|990
6VWN|1|1|U|991
6VWN|1|1|U|992
6VWN|1|1|G|993
6VWN|1|1|A|994
6VWN|1|1|C|995
6VWN|1|1|A|996
6VWN|1|1|U|997
*
6VWN|1|1|A|1044
6VWN|1|1|C|1045
6VWN|1|1|A|1046
6VWN|1|1|G|1047
*
6VWN|1|1|C|1210
6VWN|1|1|U|1211
6VWN|1|1|U|1212
6VWN|1|1|A|1213
6VWN|1|1|C|1214
6VWN|1|1|G|1215
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain m
- 30S ribosomal protein S14
Coloring options: