3D structure

PDB id
6VWN (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UAU*AGACUGC*GAGGAAGGUG
Length
20 nucleotides
Bulged bases
6VWN|1|1|U|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VWN_031 not in the Motif Atlas
Homologous match to J3_5J7L_054
Geometric discrepancy: 0.1957
The information below is about J3_5J7L_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

6VWN|1|1|U|1116
6VWN|1|1|A|1117
6VWN|1|1|U|1118
*
6VWN|1|1|A|1155
6VWN|1|1|G|1156
6VWN|1|1|A|1157
6VWN|1|1|C|1158
6VWN|1|1|U|1159
6VWN|1|1|G|1160
6VWN|1|1|C|1161
*
6VWN|1|1|G|1175
6VWN|1|1|A|1176
6VWN|1|1|G|1177
6VWN|1|1|G|1178
6VWN|1|1|A|1179
6VWN|1|1|A|1180
6VWN|1|1|G|1181
6VWN|1|1|G|1182
6VWN|1|1|U|1183
6VWN|1|1|G|1184

Current chains

Chain 1
16S ribosomal RNA

Nearby chains

Chain a
30S ribosomal protein S2
Chain h
30S ribosomal protein S9
Chain i
30S ribosomal protein S10
Chain m
30S ribosomal protein S14

Coloring options:


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