J3_6VWN_034
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGAAG*CGCGAUACAG*CGUAC
- Length
- 20 nucleotides
- Bulged bases
- 6VWN|1|2|U|321, 6VWN|1|2|C|323
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VWN_034 not in the Motif Atlas
- Homologous match to J3_5J7L_068
- Geometric discrepancy: 0.1631
- The information below is about J3_5J7L_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46299.2
- Basepair signature
- cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
6VWN|1|2|G|297
6VWN|1|2|G|298
6VWN|1|2|A|299
6VWN|1|2|A|300
6VWN|1|2|G|301
*
6VWN|1|2|C|316
6VWN|1|2|G|317
6VWN|1|2|C|318
6VWN|1|2|G|319
6VWN|1|2|A|320
6VWN|1|2|U|321
6VWN|1|2|A|322
6VWN|1|2|C|323
6VWN|1|2|A|324
6VWN|1|2|G|325
*
6VWN|1|2|C|337
6VWN|1|2|G|338
6VWN|1|2|U|339
6VWN|1|2|A|340
6VWN|1|2|C|341
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain S
- 50S ribosomal protein L24
Coloring options: