3D structure

PDB id
6VWN (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GGAAG*CGCGAUACAG*CGUAC
Length
20 nucleotides
Bulged bases
6VWN|1|2|U|321, 6VWN|1|2|C|323
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VWN_034 not in the Motif Atlas
Homologous match to J3_5J7L_068
Geometric discrepancy: 0.1631
The information below is about J3_5J7L_068
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46299.2
Basepair signature
cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
Number of instances in this motif group
3

Unit IDs

6VWN|1|2|G|297
6VWN|1|2|G|298
6VWN|1|2|A|299
6VWN|1|2|A|300
6VWN|1|2|G|301
*
6VWN|1|2|C|316
6VWN|1|2|G|317
6VWN|1|2|C|318
6VWN|1|2|G|319
6VWN|1|2|A|320
6VWN|1|2|U|321
6VWN|1|2|A|322
6VWN|1|2|C|323
6VWN|1|2|A|324
6VWN|1|2|G|325
*
6VWN|1|2|C|337
6VWN|1|2|G|338
6VWN|1|2|U|339
6VWN|1|2|A|340
6VWN|1|2|C|341

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L4
Chain S
50S ribosomal protein L24

Coloring options:


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