J3_6VWV_002

3D structure

PDB id

6VWV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Transitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUAAU*AGUUUCUACC*GAUU

Length

19 nucleotides

Bulged bases

6VWV|1|B|U|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VWV_002 not in the Motif Atlas

Homologous match to J3_4XNR_001

Geometric discrepancy: 0.0694

The information below is about J3_4XNR_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44163.4

Basepair signature

cWW-cWS-cWW-F-tWS-F-F-cWW-cWW-cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

6VWV|1|B|A|21
6VWV|1|B|U|22
6VWV|1|B|A|23
6VWV|1|B|A|24
6VWV|1|B|U|25
*
6VWV|1|B|A|45
6VWV|1|B|G|46
6VWV|1|B|U|47
6VWV|1|B|U|48
6VWV|1|B|U|49
6VWV|1|B|C|50
6VWV|1|B|U|51
6VWV|1|B|A|52
6VWV|1|B|C|53
6VWV|1|B|C|54
*
6VWV|1|B|G|72
6VWV|1|B|A|73
6VWV|1|B|U|74
6VWV|1|B|U|75

Current chains

Chain B

adenine riboswitch aptamer variant

Nearby chains