J3_6VYR_005
3D structure
- PDB id
- 6VYR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VYR_005 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0664
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
6VYR|1|D|C|936
6VYR|1|D|A|937
6VYR|1|D|A|938
6VYR|1|D|G|939
*
6VYR|1|D|C|1344
6VYR|1|D|U|1345
6VYR|1|D|A|1346
6VYR|1|D|G|1347
6VYR|1|D|U|1348
6VYR|1|D|A|1349
6VYR|1|D|A|1350
*
6VYR|1|D|U|1372
6VYR|1|D|G|1373
6VYR|1|D|A|1374
6VYR|1|D|A|1375
6VYR|1|D|U|1376
6VYR|1|D|A|1377
6VYR|1|D|C|1378
6VYR|1|D|G|1379
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain A
- Transfer RNA; tRNA
- Chain M
- 30S ribosomal protein S7
- Chain O
- 30S ribosomal protein S9
Coloring options: