J3_6VYR_008

3D structure

PDB id

6VYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

6VYR|1|D|C|1214

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYR_008 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1166

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

6VYR|1|D|C|990
6VYR|1|D|U|991
6VYR|1|D|U|992
6VYR|1|D|G|993
*
6VYR|1|D|C|1045
6VYR|1|D|A|1046
6VYR|1|D|G|1047
*
6VYR|1|D|C|1210
6VYR|1|D|U|1211
6VYR|1|D|U|1212
6VYR|1|D|A|1213
6VYR|1|D|C|1214
6VYR|1|D|G|1215

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14