J3_6VYT_017

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

AGGA*UUUAAAG*CACU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYT_017 not in the Motif Atlas

Geometric match to J3_8VTW_042

Geometric discrepancy: 0.3042

The information below is about J3_8VTW_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46457.1

Basepair signature

cWW-F-F-F-F-cSS-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

6VYT|1|a|A|1054
6VYT|1|a|G|1055
6VYT|1|a|G|1056
6VYT|1|a|A|1057
*
6VYT|1|a|U|1081
6VYT|1|a|U|1082
6VYT|1|a|U|1083
6VYT|1|a|A|1084
6VYT|1|a|A|1085
6VYT|1|a|A|1086
6VYT|1|a|G|1087
*
6VYT|1|a|C|1102
6VYT|1|a|A|1103
6VYT|1|a|C|1104
6VYT|1|a|U|1105

Current chains

Chain a

23S rRNA

Nearby chains

Chain q

50S ribosomal protein L36