J3_6VYT_030

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6VYT|1|D|C|1214

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYT_030 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1237

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6VYT|1|D|C|990
6VYT|1|D|U|991
6VYT|1|D|U|992
6VYT|1|D|G|993
6VYT|1|D|A|994
6VYT|1|D|C|995
6VYT|1|D|A|996
6VYT|1|D|U|997
*
6VYT|1|D|A|1044
6VYT|1|D|C|1045
6VYT|1|D|A|1046
6VYT|1|D|G|1047
*
6VYT|1|D|C|1210
6VYT|1|D|U|1211
6VYT|1|D|U|1212
6VYT|1|D|A|1213
6VYT|1|D|C|1214
6VYT|1|D|G|1215

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14