J3_6VYT_034

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6VYT|1|a|U|321

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYT_034 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0459

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6VYT|1|a|G|297
6VYT|1|a|G|298
6VYT|1|a|A|299
6VYT|1|a|A|300
6VYT|1|a|G|301
*
6VYT|1|a|C|316
6VYT|1|a|G|317
6VYT|1|a|C|318
6VYT|1|a|G|319
6VYT|1|a|A|320
6VYT|1|a|U|321
6VYT|1|a|A|322
6VYT|1|a|C|323
6VYT|1|a|A|324
6VYT|1|a|G|325
*
6VYT|1|a|C|337
6VYT|1|a|G|338
6VYT|1|a|U|339
6VYT|1|a|A|340
6VYT|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4