J3_6VYU_005

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYU_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0664

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6VYU|1|D|C|936
6VYU|1|D|A|937
6VYU|1|D|A|938
6VYU|1|D|G|939
*
6VYU|1|D|C|1344
6VYU|1|D|U|1345
6VYU|1|D|A|1346
6VYU|1|D|G|1347
6VYU|1|D|U|1348
6VYU|1|D|A|1349
6VYU|1|D|A|1350
*
6VYU|1|D|U|1372
6VYU|1|D|G|1373
6VYU|1|D|A|1374
6VYU|1|D|A|1375
6VYU|1|D|U|1376
6VYU|1|D|A|1377
6VYU|1|D|C|1378
6VYU|1|D|G|1379

Current chains

Chain D

16S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA

Chain M

30S ribosomal protein S7

Chain O

30S ribosomal protein S9