J3_6VYU_011
3D structure
- PDB id
- 6VYU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- UAU*AGAC*GGUG
- Length
- 11 nucleotides
- Bulged bases
- 6VYU|1|D|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VYU_011 not in the Motif Atlas
- Homologous match to J3_5J7L_010
- Geometric discrepancy: 0.0946
- The information below is about J3_5J7L_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.4
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6VYU|1|D|U|1116
6VYU|1|D|A|1117
6VYU|1|D|U|1118
*
6VYU|1|D|A|1155
6VYU|1|D|G|1156
6VYU|1|D|A|1157
6VYU|1|D|C|1158
*
6VYU|1|D|G|1181
6VYU|1|D|G|1182
6VYU|1|D|U|1183
6VYU|1|D|G|1184
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S2
- Chain M
- 30S ribosomal protein S7
- Chain O
- 30S ribosomal protein S9
- Chain P
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
Coloring options: