3D structure

PDB id
6VYU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
7 Å

Loop

Sequence
CAUC*GUA*UUUAAAG
Length
14 nucleotides
Bulged bases
6VYU|1|a|A|2518, 6VYU|1|a|U|2519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VYU_023 not in the Motif Atlas
Homologous match to J3_5J7L_046
Geometric discrepancy: 0.0573
The information below is about J3_5J7L_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.5
Basepair signature
cWW-tWH-cHW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

6VYU|1|a|C|2517
6VYU|1|a|A|2518
6VYU|1|a|U|2519
6VYU|1|a|C|2520
*
6VYU|1|a|G|2545
6VYU|1|a|U|2546
6VYU|1|a|A|2547
*
6VYU|1|a|U|2561
6VYU|1|a|U|2562
6VYU|1|a|U|2563
6VYU|1|a|A|2564
6VYU|1|a|A|2565
6VYU|1|a|A|2566
6VYU|1|a|G|2567

Current chains

Chain a
23S rRNA

Nearby chains

Chain j
50S ribosomal protein L3
Chain t
50S ribosomal protein L14

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1521 s