J3_6VYU_034

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6VYU|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYU_034 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.046

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6VYU|1|a|G|297
6VYU|1|a|G|298
6VYU|1|a|A|299
6VYU|1|a|A|300
6VYU|1|a|G|301
*
6VYU|1|a|C|316
6VYU|1|a|G|317
6VYU|1|a|C|318
6VYU|1|a|G|319
6VYU|1|a|A|320
6VYU|1|a|U|321
6VYU|1|a|A|322
6VYU|1|a|C|323
6VYU|1|a|A|324
6VYU|1|a|G|325
*
6VYU|1|a|C|337
6VYU|1|a|G|338
6VYU|1|a|U|339
6VYU|1|a|A|340
6VYU|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4