J3_6VYW_015

3D structure

PDB id

6VYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6VYW|1|a|U|686, 6VYW|1|a|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYW_015 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0547

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6VYW|1|a|U|683
6VYW|1|a|G|684
6VYW|1|a|A|685
6VYW|1|a|U|686
6VYW|1|a|C|687
6VYW|1|a|U|688
6VYW|1|a|A|689
*
6VYW|1|a|U|773
6VYW|1|a|G|774
6VYW|1|a|G|775
*
6VYW|1|a|C|791
6VYW|1|a|A|792
6VYW|1|a|A|793
6VYW|1|a|A|794

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2

Chain m

50S ribosomal protein L34