J3_6VYW_029
3D structure
- PDB id
- 6VYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VYW_029 not in the Motif Atlas
- Homologous match to J3_5J7L_005
- Geometric discrepancy: 0.1135
- The information below is about J3_5J7L_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6VYW|1|D|U|943
6VYW|1|D|G|944
6VYW|1|D|G|945
6VYW|1|D|A|946
*
6VYW|1|D|U|1235
6VYW|1|D|A|1236
6VYW|1|D|C|1237
*
6VYW|1|D|G|1337
6VYW|1|D|G|1338
6VYW|1|D|A|1339
6VYW|1|D|A|1340
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain A
- Transfer RNA; tRNA
- Chain B
- Transfer RNA; tRNA
- Chain O
- 30S ribosomal protein S9
- Chain X
- 30S ribosomal protein S13
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