J3_6VYX_009
3D structure
- PDB id
- 6VYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.9 Å
Loop
- Sequence
- CGUCAG*CGAACC*GAUGACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6VYX|1|D|C|1063
6VYX|1|D|G|1064
6VYX|1|D|U|1065
6VYX|1|D|C|1066
6VYX|1|D|A|1067
6VYX|1|D|G|1068
*
6VYX|1|D|C|1107
6VYX|1|D|G|1108
6VYX|1|D|A|1110
6VYX|1|D|A|1111
6VYX|1|D|C|1112
6VYX|1|D|C|1113
*
6VYX|1|D|G|1187
6VYX|1|D|A|1188
6VYX|1|D|U|1189
6VYX|1|D|G|1190
6VYX|1|D|A|1191
6VYX|1|D|C|1192
6VYX|1|D|G|1193
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S2
- Chain I
- 30S ribosomal protein S3
- Chain K
- 30S ribosomal protein S5
- Chain M
- 30S ribosomal protein S7
- Chain O
- 30S ribosomal protein S9
- Chain P
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
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