J3_6VYX_015

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6VYX|1|a|U|686, 6VYX|1|a|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYX_015 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0548

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6VYX|1|a|U|683
6VYX|1|a|G|684
6VYX|1|a|A|685
6VYX|1|a|U|686
6VYX|1|a|C|687
6VYX|1|a|U|688
6VYX|1|a|A|689
*
6VYX|1|a|U|773
6VYX|1|a|G|774
6VYX|1|a|G|775
*
6VYX|1|a|C|791
6VYX|1|a|A|792
6VYX|1|a|A|793
6VYX|1|a|A|794

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2

Chain m

50S ribosomal protein L34