J3_6VYX_016

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYX_016 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0531

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6VYX|1|a|C|698
6VYX|1|a|A|699
6VYX|1|a|G|700
*
6VYX|1|a|C|732
6VYX|1|a|G|733
6VYX|1|a|A|734
6VYX|1|a|A|735
6VYX|1|a|C|736
*
6VYX|1|a|G|760
6VYX|1|a|A|761
6VYX|1|a|U|762
6VYX|1|a|G|763

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2