3D structure

PDB id
6VYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site
Experimental method
ELECTRON MICROSCOPY
Resolution
9.9 Å

Loop

Sequence
CUAAU*AGGUUAG*CAUAAG
Length
18 nucleotides
Bulged bases
6VYX|1|a|U|2334
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VYX_022 not in the Motif Atlas
Homologous match to J3_5J7L_071
Geometric discrepancy: 0.175
The information below is about J3_5J7L_071
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44961.1
Basepair signature
cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
Number of instances in this motif group
1

Unit IDs

6VYX|1|a|C|2295
6VYX|1|a|U|2296
6VYX|1|a|A|2297
6VYX|1|a|A|2298
6VYX|1|a|U|2299
*
6VYX|1|a|A|2317
6VYX|1|a|G|2318
6VYX|1|a|G|2319
6VYX|1|a|U|2320
6VYX|1|a|U|2321
6VYX|1|a|A|2322
6VYX|1|a|G|2323
*
6VYX|1|a|C|2332
6VYX|1|a|A|2333
6VYX|1|a|U|2334
6VYX|1|a|A|2335
6VYX|1|a|A|2336
6VYX|1|a|G|2337

Current chains

Chain a
23S rRNA

Nearby chains

Chain b
50S ribosomal protein L27
Chain d
5S ribosomal RNA; 5S rRNA
Chain n
50S ribosomal protein L5
Chain x
50S ribosomal protein L18

Coloring options:


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