J3_6VYY_023

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

6VYY|1|a|A|2518, 6VYY|1|a|U|2519

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYY_023 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0572

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6VYY|1|a|C|2517
6VYY|1|a|A|2518
6VYY|1|a|U|2519
6VYY|1|a|C|2520
*
6VYY|1|a|G|2545
6VYY|1|a|U|2546
6VYY|1|a|A|2547
*
6VYY|1|a|U|2561
6VYY|1|a|U|2562
6VYY|1|a|U|2563
6VYY|1|a|A|2564
6VYY|1|a|A|2565
6VYY|1|a|A|2566
6VYY|1|a|G|2567

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14