3D structure

PDB id
6VYZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex C6 (TTC-C6) containing mRNA with a 21 nt long spacer, NusA, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
9.9 Å

Loop

Sequence
GGAAG*CGCGAUACAG*CGUAC
Length
20 nucleotides
Bulged bases
6VYZ|1|a|U|321
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VYZ_034 not in the Motif Atlas
Homologous match to J3_5J7L_068
Geometric discrepancy: 0.0459
The information below is about J3_5J7L_068
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46299.2
Basepair signature
cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
Number of instances in this motif group
3

Unit IDs

6VYZ|1|a|G|297
6VYZ|1|a|G|298
6VYZ|1|a|A|299
6VYZ|1|a|A|300
6VYZ|1|a|G|301
*
6VYZ|1|a|C|316
6VYZ|1|a|G|317
6VYZ|1|a|C|318
6VYZ|1|a|G|319
6VYZ|1|a|A|320
6VYZ|1|a|U|321
6VYZ|1|a|A|322
6VYZ|1|a|C|323
6VYZ|1|a|A|324
6VYZ|1|a|G|325
*
6VYZ|1|a|C|337
6VYZ|1|a|G|338
6VYZ|1|a|U|339
6VYZ|1|a|A|340
6VYZ|1|a|C|341

Current chains

Chain a
23S rRNA

Nearby chains

Chain 3
50S ribosomal protein L24
Chain l
50S ribosomal protein L4

Coloring options:


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