J3_6VZ3_017

3D structure

PDB id

6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AGGA*UUUAAAG*CACU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VZ3_017 not in the Motif Atlas

Geometric match to J3_8VTW_042

Geometric discrepancy: 0.3042

The information below is about J3_8VTW_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46457.1

Basepair signature

cWW-F-F-F-F-cSS-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

6VZ3|1|a|A|1054
6VZ3|1|a|G|1055
6VZ3|1|a|G|1056
6VZ3|1|a|A|1057
*
6VZ3|1|a|U|1081
6VZ3|1|a|U|1082
6VZ3|1|a|U|1083
6VZ3|1|a|A|1084
6VZ3|1|a|A|1085
6VZ3|1|a|A|1086
6VZ3|1|a|G|1087
*
6VZ3|1|a|C|1102
6VZ3|1|a|A|1103
6VZ3|1|a|C|1104
6VZ3|1|a|U|1105

Current chains

Chain a

23S rRNA

Nearby chains

Chain q

50S ribosomal protein L36