J3_6VZ3_030
3D structure
- PDB id
- 6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 6VZ3|1|D|C|1214
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VZ3_030 not in the Motif Atlas
- Homologous match to J3_5J7L_053
- Geometric discrepancy: 0.1236
- The information below is about J3_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.2
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6VZ3|1|D|C|990
6VZ3|1|D|U|991
6VZ3|1|D|U|992
6VZ3|1|D|G|993
6VZ3|1|D|A|994
6VZ3|1|D|C|995
6VZ3|1|D|A|996
6VZ3|1|D|U|997
*
6VZ3|1|D|A|1044
6VZ3|1|D|C|1045
6VZ3|1|D|A|1046
6VZ3|1|D|G|1047
*
6VZ3|1|D|C|1210
6VZ3|1|D|U|1211
6VZ3|1|D|U|1212
6VZ3|1|D|A|1213
6VZ3|1|D|C|1214
6VZ3|1|D|G|1215
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain S
- 30S ribosomal protein S14
Coloring options: