J3_6VZ3_034

3D structure

PDB id

6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6VZ3|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VZ3_034 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.046

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6VZ3|1|a|G|297
6VZ3|1|a|G|298
6VZ3|1|a|A|299
6VZ3|1|a|A|300
6VZ3|1|a|G|301
*
6VZ3|1|a|C|316
6VZ3|1|a|G|317
6VZ3|1|a|C|318
6VZ3|1|a|G|319
6VZ3|1|a|A|320
6VZ3|1|a|U|321
6VZ3|1|a|A|322
6VZ3|1|a|C|323
6VZ3|1|a|A|324
6VZ3|1|a|G|325
*
6VZ3|1|a|C|337
6VZ3|1|a|G|338
6VZ3|1|a|U|339
6VZ3|1|a|A|340
6VZ3|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4