J3_6VZ5_015

3D structure

PDB id

6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6VZ5|1|a|U|686, 6VZ5|1|a|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VZ5_015 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0548

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6VZ5|1|a|U|683
6VZ5|1|a|G|684
6VZ5|1|a|A|685
6VZ5|1|a|U|686
6VZ5|1|a|C|687
6VZ5|1|a|U|688
6VZ5|1|a|A|689
*
6VZ5|1|a|U|773
6VZ5|1|a|G|774
6VZ5|1|a|G|775
*
6VZ5|1|a|C|791
6VZ5|1|a|A|792
6VZ5|1|a|A|793
6VZ5|1|a|A|794

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2

Chain m

50S ribosomal protein L34