J3_6VZ5_023

3D structure

PDB id

6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

6VZ5|1|a|A|2518, 6VZ5|1|a|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VZ5_023 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0572

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6VZ5|1|a|C|2517
6VZ5|1|a|A|2518
6VZ5|1|a|U|2519
6VZ5|1|a|C|2520
*
6VZ5|1|a|G|2545
6VZ5|1|a|U|2546
6VZ5|1|a|A|2547
*
6VZ5|1|a|U|2561
6VZ5|1|a|U|2562
6VZ5|1|a|U|2563
6VZ5|1|a|A|2564
6VZ5|1|a|A|2565
6VZ5|1|a|A|2566
6VZ5|1|a|G|2567

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14