J3_6VZ5_030

3D structure

PDB id

6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6VZ5|1|D|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VZ5_030 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1236

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6VZ5|1|D|C|990
6VZ5|1|D|U|991
6VZ5|1|D|U|992
6VZ5|1|D|G|993
6VZ5|1|D|A|994
6VZ5|1|D|C|995
6VZ5|1|D|A|996
6VZ5|1|D|U|997
*
6VZ5|1|D|A|1044
6VZ5|1|D|C|1045
6VZ5|1|D|A|1046
6VZ5|1|D|G|1047
*
6VZ5|1|D|C|1210
6VZ5|1|D|U|1211
6VZ5|1|D|U|1212
6VZ5|1|D|A|1213
6VZ5|1|D|C|1214
6VZ5|1|D|G|1215

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14