3D structure

PDB id
6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
8.9 Å

Loop

Sequence
CUUGACAU*ACAG*CUUACG
Length
18 nucleotides
Bulged bases
6VZ5|1|D|C|1214
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VZ5_030 not in the Motif Atlas
Homologous match to J3_5J7L_053
Geometric discrepancy: 0.1236
The information below is about J3_5J7L_053
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76475.2
Basepair signature
cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
Number of instances in this motif group
2

Unit IDs

6VZ5|1|D|C|990
6VZ5|1|D|U|991
6VZ5|1|D|U|992
6VZ5|1|D|G|993
6VZ5|1|D|A|994
6VZ5|1|D|C|995
6VZ5|1|D|A|996
6VZ5|1|D|U|997
*
6VZ5|1|D|A|1044
6VZ5|1|D|C|1045
6VZ5|1|D|A|1046
6VZ5|1|D|G|1047
*
6VZ5|1|D|C|1210
6VZ5|1|D|U|1211
6VZ5|1|D|U|1212
6VZ5|1|D|A|1213
6VZ5|1|D|C|1214
6VZ5|1|D|G|1215

Current chains

Chain D
16S rRNA

Nearby chains

Chain S
30S ribosomal protein S14

Coloring options:


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