J3_6VZ5_034

3D structure

PDB id

6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6VZ5|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VZ5_034 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0459

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6VZ5|1|a|G|297
6VZ5|1|a|G|298
6VZ5|1|a|A|299
6VZ5|1|a|A|300
6VZ5|1|a|G|301
*
6VZ5|1|a|C|316
6VZ5|1|a|G|317
6VZ5|1|a|C|318
6VZ5|1|a|G|319
6VZ5|1|a|A|320
6VZ5|1|a|U|321
6VZ5|1|a|A|322
6VZ5|1|a|C|323
6VZ5|1|a|A|324
6VZ5|1|a|G|325
*
6VZ5|1|a|C|337
6VZ5|1|a|G|338
6VZ5|1|a|U|339
6VZ5|1|a|A|340
6VZ5|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4